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Contract Research

Protein Quantification

Customized proteomics service for global and targeted quantification of proteins.

Protein Quantification features a standardized discovery proteomics service based on Hyper Reaction Monitoring (HRM-MS™), a next-generation proteomics technology invented at Biognosys for quantification of complete proteomes, or targeted proteomics solutions for protein-of-interest quantification using MRM/PRM. 


Global Protein Quantification

Biognosys’ Discovery Proteomics (HRM-MS™) enables hypothesis-free quantification of thousands of proteins per sample from virtually any fluid or tissue. This allows the identification of significantly regulated proteins between different conditions (e.g. treated/untreated, healthy/diseased).

The Protein Quantification service features a proven HRM workflow with a deep proteome profile and a fast turnaround time of 5-6 weeks for standard projects. It is ideal for researchers looking for a deep hypothesis-free proteome quantification service.

Post-translational modification analysis and other customized services are also available upon request.

Learn more about the revolutionary next-generation proteomics, Hyper Reaction Monitoring (HRM™) in our technology section.

Learn about Biognosys tools that enable you to transfer HRM technology to your own lab.

The unbiased Protein Quantification service can be carried out for virtually any species and biological matrix.


Detailed information for the most frequently requested sample types:


  Tissue Cell-lines Plasma Urine CSF
Sample preparation protocols available yes yes yes yes yes
# of proteins typically identified in the sample 3’000-10’000 3’000-10’000 300-600 (depleted
plasma 500-1’400)
600-2’600 500-1’500
Sample amount required 5-10 mg 105-106 cells 5-10 ul 100-200 ul 50-100 ul


Targeted Protein Quantification

Targeted Protein Quantification is a customized targeted proteomics service based on Multiple or Parallel Reaction Monitoring (MRM and PRM). MRM and PRM are targeted proteomics techniques that offer highly specific and sensitive quantification of your proteins of interest in complex biological samples.

The targeted proteomics service includes sample preparation and assay development with stable isotope peptides for absolute or relative quantification of the selected proteins. The LC-MS measurements of your samples can be performed in our state-of-the-art proteomics lab or the method can be transferred to your facility. Targeted proteomics allows a high-throughput quantification of up to 100 proteins and is ideal for researchers interested in absolute quantification of the selected proteins in hundreds or thousands of samples.


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Project Management

Biognosys is committed to providing the best possible results to our customers. We consider confidentiality, proactive communication, and structured project management as key factors in a successful customer relationship. Service projects are usually structured in the following way:

1. Project Set-up

  • We make sure we understand your research objective
  • We determine the most suitable proteomics strategy together with you
  • Our scientific team prepares a detailed project proposal – you may accept or decline the contract

2. Project Execution

  • A scientific project manager is assigned to your project
  • We initiate the project the moment we receive your samples
  • You receive regular reports on the progress of your project

3. Project Reporting

  • A final report with data analysis and a description of all methods is delivered upon project completion. Depending on the number of samples, the turnaround time from receiving the samples to the final report is 5-6 weeks



The results are presented and discussed with you in a seminar or webinar and delivered electronically in PDF and Excel formats that contain:


  • Executive Summary
  • Materials and Methods (suitable for publication)
  • Complete Data Matrix:
    Normalized relative protein intensities for all detected proteins or absolute quantities if stable isotope standards were used 
    Protein annotation (based on Uniprot Knowledgebase)
  • Data interpretation:
    a) Differentially regulated proteins with regulation factor and p-value
    bCoefficient of variation analysis*
    cPrincipal component analysis*
    dPartial least square discriminant analysis*
    eClustered heat map*
    fPathway analysis*
    gCustom analysis upon request

*relevant for discovery proteomics projects

Please contact us for support.


Let us help you do great proteomics!

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